Transcript : SMEST004222001.1 S. mediterranea S2F2
Length  1760   Source  In silico gene prediction (AUGUSTUS v3.3)
Score  0.17
Published Transcripts 
mRNA: JF725701.1, notum mRNA - complete cds
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_780472.3 Mus musculus notum pectinacetylesterase homolog (Drosophila) 8.86E-72 306-1649 1344 1
XP_007891925.1 Callorhinchus milii protein notum homolog 9.33E-78 294-1649 1356 1
XP_005989119.1 Latimeria chalumnae notum pectinacetylesterase homolog (Drosophila) 2.76E-75 294-1649 1356 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR21562 PANTHER IPR004963 NOTUM-RELATED 3.9E-115 1395-1676 282 1
PTHR21562 PANTHER IPR004963 NOTUM-RELATED 3.9E-115 300-1262 963 1
PTHR21562:SF11 PANTHER   3.9E-115 300-1262 963 1
PTHR21562:SF11 PANTHER   3.9E-115 1395-1676 282 1
PF03283 PFAM IPR004963 Pectinacetylesterase 4.1E-66 303-1262 960 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

8 ORFs

Contig Location Length Strand Sequence
111-1691 1581 1
1567-1758 192 -1
645-803 159 -1
1442-1597 156 -1
872-1024 153 -1
454-600 147 1
1259-1384 126 -1
1-120 120 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer








To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)